Journal Publications

"Functionalizing micro-3D-printed protein hydrogels for cell adhesion and patterning" D. S. Hernandez, E. T. Ritschdorff, S. K. Seidlits, C. E. Schmidt, J. B. Shear, J. Mater. Chem. B., 2016

"Multiphoton microfabrication of conducting polymer-based biomaterials" John. G. Hardy, Derek S. Hernandez, Damian M. Cummings, Frances A. Edwards, Jason B. Shear, Christine E. Schmidt, J. Mater. Chem. B., 2015

"Regioselective Localization and Tracking of Biomolecules on Single Gold Nanoparticles" Bharath Bangalore Rajeeva, Derek S. Hernandez, Mingsong Wang, Evan Perillo, Linhan Lin, Leonardo Scarabelli, Bharadwaj Pingali, Luis M. Liz-Marzán4, Andrew K. Dunn, Jason B. Shear, Yuebing Zheng, Advanced Science., 2015

"Transparent Carbon Ultramicroelectrode Arrays: Figures of Merit for Quantitative Spectroelectrochemistry for Biogenic Analysis of Reactive Oxygen Species" Jonathon Duay*, Janine Elliott*, Jason B. Shear, & Keith J. Stevenson, Anal. Chem., 2015

"3D-Printed Microfluidic Microdissector for High-Throughput Studies of Cellular Aging" Eric C. Spivey, Blerta Xhemalce, Jason B. Shear, and Ilya J. Finkelstein, Anal. Chem., 2014, vol. 86, 7406–7412.

"3D-Printed Microfluidic Microdissector for High-Throughput Studies of Cellular Aging" Eric C. Spivey, Blerta Xhemalce, Jason B. Shear, and Ilya J. Finkelstein, Anal. Chem., 2014, vol. 86, 7406–7412.

"Oxygen limitation within a bacterial aggregate" A. K. Wessel, T. Arshad, M. Fitzpatrick, J. L. Connell, R. Bonnecaze, J. B. Shear, and M. Whiteley, MBio, 2014, vol. 5, e00992-14.

"Real-time monitoring of quorum sensing in 3D-printed bacterial aggregates using scanning electrochemical microscopy" Jodi L. Connell, Jiyeon Kim, Allen J. Bard, Jason B. Shear, and Marvin Whiteley. Proc. Natl. Acad. Sci. USA, 2014, vol. 111, 18255-18260.

"3D Printing of Microscopic Bacterial Communities" J. L. Connell, E. T. Ritschdorff, M. Whiteley, and J. B. Shear, Proc. Natl. Acad. Sci. USA, 2013, vol. 110, 18380–18385.

"Generating Arbitrary Chemical Patterns for Multipoint Dosing of Single Cells" Todd J. Hoppe , Samira G. Moorjani, and Jason B. Shear, Anal. Chem., 2013, 85 (7), pp 3746–3751.

"Multiphoton Lithography of Unconstrained Three-Dimensional Protein Microstructures" E. C. Spivey, E. T. Ritschdorff, J. L. Connell, C. A. McLennon, C. E. Schmidt and J. B. Shear, Adv. Funct. Mat., 2013, 23, 333–339.

"The fundamental role of subcellular topography in peripheral nerve repair therapies" Eric C. Spivey, Zin Z. Khaing, Jason B. Shear, Christine E. Schmidt Biomaterials Volume 33, Issue 17, June 2012, Pages 4264–4276

"Multi-focal Multiphoton Lithography" Eric T. Ritschdorff, Rex Nielson and Jason B. Shear Lab on a Chip, 2012, 12, 867

"Sociomicrobiology in Engineered Landscapes" Jodi L Connell, Marvin Whiteley & Jason B Shear Nature Chemical Biology 8, 10–13 (2012)

"Building on the Foundation of Daring Hypotheses: Using the MKK4 Metastasis Suppressor to Develop Models of Dormancy and Metastatic Colonization." Knopeke, M.T.; Ritschdorff, E.T.; Clark, R.; Khan, S.; Thobe, M.; Shear, J.B.; Rinker-Schaeffer, C.W. FEBS Letters. 2011, 585, 3159 – 3165.

"Fibronectin-Hyaluronic Acid Composite Hydrogels for Three-Dimensional Endothelial Cell Culture" Seidlits, S.K., C.T. Drinnan, R.R. Petersen, J.B. Shear, L.J. Suggs, C.E. Schmidt Acta Biomaterialia, 2011, 7:2401-2409.

"Probing Prokaryotic Social Behaviors with Bacterial 'Lobster Traps'" Jodi L. Connell, Aimee K. Wessel, Matthew R. Parsek, Andrew D. Ellington, Marvin Whiteley, and Jason B. Shear mBio 1(4) 2010. e00202–10

"Multiphoton Lithography Using a High-Repetition Rate Microchip Laser" Eric T. Ritschdorff and Jason B. Shear, Analytical Chemistry, 2010, 82, 8733 – 8737.

"A Highly Selective Low-Background Fluorescent Imaging Agent for Nitric Oxide." Yang Y, Seidlits SK, Adams MM, Lynch VM, Schmidt CE, Anslyn EV, Shear JB, J Am Chem Soc.,2010, 132, 13114–13116

"Dynamic Remodeling of Subcellular Chemical Gradients using a Multi-directional Flow Device." Moorjani S, Nielson R, Chang XA, Shear JB. Lab Chip 2010,10, 2139-46.

"The Effects of Hyaluronic Acid Hydrogels with Tunable Mechanical Properties on Neural Progenitor Cell Differentiation." S.K. Seidlits, Z.Z. Khaing, R.R. Petersen, J.D. Nickels, J.E. Vanscoy, J.B. Shear, and C. E. Schmidt, Biomaterials, 2010, 31, 3930-3940.

"High-Resolution Patterning of Hydrogels in Three-Dimensions using Direct-Write Photofabrication for Cell Guidance." Stephanie K. Seidlits, Christine E. Schmidt, and Jason B. Shear, Adv. Funct. Mater., 2009, 19, 3543-3551.

"Microsecond Analysis of Transient Molecules Using Bi-Directional Capillary Electrophoresis." E.T. Ritschdorff, M.L. Plenert, J.B. Shear, Anal. Chem., 2009, 81, 8790-8796.

"High-throughput Design of Microfluidics Based on Directed Bacterial Motility." Bryan Kaehr and Jason B. Shear, Lab Chip, 2009, 9, 2632-2637.

"Microreplication and Design of Biological Architectures using Dynamic-Mask Multiphoton Lithography." R. Nielson, B. Kaehr, J.B. Shear, Small, 2009, 5, No. 1, 120-125.

"Multiphoton Fabrication of Chemically Responsive Protein Hydrogels for Microactuation." B. Kaehr, J. B. Shear, Proc. Natl. Acad. Sci. USA 2008 105 8850-8854.

"Modular Fluorescent Benzobis(imidazolium) Salts: Syntheses, Photophysical Analyses, and Applications" A. J. Boydston, P. D. Vu, O. L. Dykhno, V. Chang, A. R. Wyatt, A. S. Stockett, E. T. Ritschdorff, J. Shear, and C. W. Bielawski, J. Am. Chem. Soc. 2008 130 (10) 3143-3156.

"Direct Electrochemical and Spectroscopic Assessment of Heme Integrity in Multiphoton Photo-Cross-Linked Cytochrome c Structures" J. Lyon, R. T. Hill, J. Shear, and K. Stevenson, Anal. Chem. 2007 79(6) 2303-2311.

"Mask-Directed Multiphoton Lithography"  B. Kaehr and J. B. Shear, J. Am. Chem. Soc. 2007 129 (7),1904-1905.

"Enzyme-Nanoparticle Functionalization of Three-Dimensional Protein Scaffolds"    R. T. Hill and J. B. Shear, Anal. Chem. 2006 78 (19) 7022 -7026.

"Parallel Chemical Dosing of Subcellular Targets"  R. Nielson and J. B. Shear, Anal. Chem. (Accelerated Article) 2006  78, 5987 - 5993.

"Direct-Write Fabrication of Functional Protein Matrixes Using a Low-Cost Q-Switched Laser"  B. Kaehr*, N. Ertas*, R. Nielson, R. Allen, R. T. Hill, M. Plenert, and J. B. Shear, Anal. Chem. 2006 78 3198-3202.

"Quantitation of nicotinamide and serotonin derivatives and detection of flavins in neuronal extracts using capillary electrophoresis with multiphoton-excited fluorescence,"  D. D. Wise and J. B. Shear, J. Chrom. A 2006 1111 153-158.

"A microbead array chemical sensor using capillary-based sample introduction: toward the development of an “electronic tongue"  S. Sohn, A. Goodey, E. Anslyn, J. McDevitt, J. Shear, and D. Neikirk, Biosensors and Bioelectronics  2005  21  303-312.

"Catalytic Three-Dimensional Protein Architectures"  R. Allen*, R. Nielson*, D. D. Wise, and J. Shear, Anal. Chem. (Accelerated Article) 2005 77 5089 -5095.

"Microfabrication of Three-Dimensional Bioelectronic Architectures"  R. T. Hill*, J. Lyon*, R. Allen, K. Stevenson, and J. Shear, J. Am. Chem. Soc. 2005 127 10707-10711.

"Guiding Neuronal Development with in situ Microfabrication," B. Kaehr*, R. Allen*, D. J. Javier, J. Currie, J. B. Shear, Proc. Natl. Acad. Sci. USA 2004 101 16104-16108.

"Circadian Tracking of Nicotinamide Cofactor Levels in an Immortalized Suprachiasmatic Nucleus Cell Line," D. D. Wise and J. B. Shear, Neuroscience 2004 128 263-268.

"A Micromachined Fluidic Structure for Capillary-based Sample Introduction into a Microbead Array Chemical Sensor," Y. Sohn, A. Goody, E. V. Anslyn, J. T. McDevitt, J. B. Shear, D. P. Neikirk, Sensor Letters  2004  2, 69-72.

"Multiphoton-Excited Serotonin Photochemistry," M. L. Gostkowski, R. Allen, M. L. Plenert, E. Okerberg, M. J. Gordon, J. B. Shear, Biophys. J. 2004 86, 3223-9.

"Tracking Variations in Nicotinamide Cofactors Extracted from Cultured Cells using Capillary Electrophoresis with Multiphoton Excitation of Fluorescence," D. D. Wise, J. B. Shear, Anal Biochem. 2004 326, 225-33.

"Towards Nanoscale Three-dimensional Fabrication using Two-photon Initiated Polymerization and Near-field Excitation," B. Postnikova, J. Currie, T. Doyle, R. Hanes, E. V. Anslyn, J. B. Shear, D. Vanden Bout, Microelectron. Eng. 2003 69, 459-465.

"Microsecond Electrophoresis," M. L. Plenert and J. B. Shear, Proc. Nat. Acad. Sci. USA 2003, 100, 38533857.

"Stochastic Sensing of IP3 Has Far-Reaching Consequences," E. V. Anslyn and J. B. Shear, Chemistry & Biology 2002  9, 779780.

"Attomole Electrophoretic Analysis of Catecholamines using Copper-Catalyzed Intramolecular Cyclization," M. L. Gostkowski, J. Wei, E. Okerberg, J. B. Shear, Anal. Biochem. 2002, 303, 199202.

"Enzyme-Based Sensor Arrays for Rapid Characterization of Complex Disaccharide Solutions," T. E. Curey, M. A. Salazar, P. Oliveira, D. J. Javier, P. J. Dennis, P. Rao, J. B. Shear, Anal. Biochem 2002, 303, 42-48.

"Electrophoretic Characterization of Transient Photochemical Reaction Products," M. J. Gordon, E. Okerberg, M. L. Gostkowski, J. B. Shear, J. Am. Chem. Soc. 2001, 123, 10780-10781.

"Multiphoton Excitation as a Probe for Biological Fractionations," J. B. Shear, M. L. Gostkowski, M. J. Gordon, E. Okerberg, T. E. Curey, J. B. McDoniel, T. J. Kang, D. A. Vanden Bout, Proc. SPIE-Int. Soc. Opt. Eng. 2001, 4262 (Multiphoton Microscopy in the Biomedical Sciences), 210-216.

"Characterization of Multicomponent Monosaccharide Solutions Using an Enzyme-Based Sensor Array," T. E. Curey, A. Goodey, A. Tsao, J. J. Levigne, J. T. McDevitt, E. V. Anslyn, D. P. Neikirk, J. B. Shear, Anal. Biochem. 2001, 293, 178-184.

"Neuropeptide Analysis Using Capillary Electrophoresis with Multiphoton-Excited Intrinsic Fluorescence Detection," E. Okerberg, J. B. Shear, Anal. Biochem. 2001, 292, 311-313.

"Development of Multianalyte Sensor Arrays Composed of Chemically Derivatized Polymeric Microspheres Localized in Micromachined Cavities," A. Goodey, J. J. Lavigne, S. M. Savoy, M. D. Rodriguez, T. Curey, A. Tsao, G. Simmons, J. Wright, S. -J. Yoo, Y. Sohn, E. V. Anslyn, J. B. Shear, D. P. Neikirk, J. T. McDevitt, J. Am. Chem. Soc. 2001, 123, 2559-2570.

"Attomole Level Protein Fingerprinting Based on Intrinsic Peptide Fluorescence," E. Okerberg, J. B. Shear, Anal. Chem. 2001, 73, 1610-1613.

"Electrophoretic Characterization of Dynamic Biochemical Microenvironments," M. J. Gordon, J. B. Shear, J. Am. Chem. Soc., 2001, 123, 17901791.

"Liquid Flow Through an Array-Based Chemical Sensing System," Y.-S. Sohn, A. Tsao, E. V. Anslyn, J. T. McDevitt, J. B. Shear, D. P. Neikirk, Proc. SPIE-Int. Soc. Opt. Eng. 2000, 4177 (Microfluidic Devices and Systems III), 212219.

"Effects of Molecular Oxygen on Multiphoton-Excited Photochemical Analysis of Hydroxyindoles," M. L. Gostkowski, T. Curey, E. Okerberg, T. Kang, D. A. Vanden Bout, J. B. Shear, Anal. Chem. 2000, 72, 38213825.

"Determination of Biological Toxins Using Capillary Electrokinetic chromatography with Multiphoton-Excited Fluorescence," J. Wei, E. Okerberg, J. Dunlap, C. Ly, J. B. Shear, Anal. Chem. 2000, 72, 13601363.

"Multiphoton-Excited Fluorescence in Bioanalytical Chemistry," J. Shear, Anal. Chem. 1999, 71, 598A605A.

"Single-Analyte to Multianalyte Fluorescence Sensors," J. J. Lavigne, A. Metzger, K. Niikura, L. A. Cabell, S. M. Savoy, J. S.-J. Yoo, J. T. McDevitt, D. P. Neikirk, J. B. Shear, E. V. Anslyn, Proc. SPIE-Int. Soc. Opt. Eng. 1999, 3602 (Advances in Fluorescence Sensing Technology IV), 220231.

"Sub-Attomole Fluorescence Determination of Catecholamines in Capillary Electrophoresis Effluent Streams," M. L. Gostkowski, J. B. Shear, J. Am. Chem. Soc. 1998, 120, 1296612967.

"Solution-Based Analysis of Multiple Analytes by a Sensor Array: Toward the Development of an 'Electronic Tongue,'" S. Savoy, J. J. Lavigne, J. S.-J. Yoo, J. Wright, M. Rodriguez, A. Goodey, J. B. McDoniel, J. T. McDevitt, E. V. Anslyn, J. B. Shear, A. Ellington, D. P. Neikirk, Proc. SPIE-Int. Soc. Opt. Eng. 1998, 3539 (Chemical Microsensors and Applications), 1726.

"Determination of Fluorogen-Labeled Neuorotransmitters at the Zeptomole Level Using Two-Photon Excited Fluorescence with Capillary Electrophoresis," J. Wei, M. L. Gostkowski, M. J. Gordon, J. B. Shear, Anal. Chem. 1998, 70, 34703475.

"Measurements of Serotonin and Related Indoles Using Capillary Electrophoresis with Multiphoton-Induced Hyperluminescence," M. L. Gostkowski, J. Wei, J. B. Shear, Anal. Biochem. 1998, 260, 244250.

"Solution-Based Analysis of Multiple Analytes by a Sensor Array: Toward the Development of an Electronic Tongue," J. J. Lavigne, S. Savoy, M. B. Clevenger, J. E. Richie, J. B. McDoniel, S.-J. Yoo, E. V. Anslyn, J. T. McDevitt, J. B. Shear, D. Neikirk, J. Am. Chem. Soc. 1998, 120, 64296430.

"Characterizing Spectrally Diverse Biological Chromophores Using Capillary Electrophoresis with Multiphoton-Excited Fluorescence," M. L. Gostkowski, J. B. McDoniel, J. Wei, T. E. Curey, J. B. Shear, J. Am. Chem. Soc. 1998, 120, 1822.

Referenced Book Chapters

"Biochemical Applications of Fluorescence Spectroscopy," J. B. Shear, in Encyclopedia of Spectroscopy and Spectrometry, J. C. Lindon, Ed.; Academic Press: San Diego, 2000; 77-84.